Package: lump.split.pool.ENM 0.2.4
lump.split.pool.ENM: Comparing different ENM approaches
Facilitate running simulations to compare different approaches for ecological niche modelling, namely splitting, lumping, and fit models with partial pooling. See https://doi.org/10.1016/j.tree.2018.10.012 for more information.
Authors:
lump.split.pool.ENM_0.2.4.tar.gz
lump.split.pool.ENM_0.2.4.zip(r-4.5)lump.split.pool.ENM_0.2.4.zip(r-4.4)lump.split.pool.ENM_0.2.4.zip(r-4.3)
lump.split.pool.ENM_0.2.4.tgz(r-4.4-any)lump.split.pool.ENM_0.2.4.tgz(r-4.3-any)
lump.split.pool.ENM_0.2.4.tar.gz(r-4.5-noble)lump.split.pool.ENM_0.2.4.tar.gz(r-4.4-noble)
lump.split.pool.ENM_0.2.4.tgz(r-4.4-emscripten)lump.split.pool.ENM_0.2.4.tgz(r-4.3-emscripten)
lump.split.pool.ENM.pdf |lump.split.pool.ENM.html✨
lump.split.pool.ENM/json (API)
# Install 'lump.split.pool.ENM' in R: |
install.packages('lump.split.pool.ENM', repos = c('https://pakillo.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/pakillo/lump.split.pool.enm/issues
Last updated 4 years agofrom:9f33ffb781. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 17 2024 |
R-4.5-win | NOTE | Aug 17 2024 |
R-4.5-linux | NOTE | Aug 17 2024 |
R-4.4-win | NOTE | Aug 17 2024 |
R-4.4-mac | NOTE | Aug 17 2024 |
R-4.3-win | NOTE | Aug 17 2024 |
R-4.3-mac | NOTE | Aug 17 2024 |
Exports:calculate_biasfit_bayesmixfit_lumpfit_mixedfit_pglmmfit_splitplot_nichesrun_simsrun_simulationsimul_data
Dependencies:abindapearmbackportsbayesplotBHbootbridgesamplingbrmsBrobdingnagbroomcallrcheckmatecliclusterGenerationcodacodetoolscolorspacecombinatcorpcorcpp11cubatureDEoptimdescdigestdistributionaldoParalleldplyrexpmfansifarverfastmatchforeachfuturefuture.applygenericsggplot2ggridgesglobalsgluegridExtragtablegtoolsigraphinlineisobanditeratorslabelinglatticelifecyclelistenvlme4loomagrittrmapsMASSMatrixmatrixStatsMCMCglmmmgcvminqamnormtmunsellmvtnormnleqslvnlmenloptrnumDerivoptimParallelparallellyphangornphytoolspillarpkgbuildpkgconfigplyrposteriorprocessxpspurrrquadprogQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelreshape2rlangrstanrstantoolsscalesscatterplot3dStanHeadersstringistringrtensorAtibbletidyrtidyselectutf8vctrsviridisviridisLitewithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Calculate bias after simulations | calculate_bias |
Fit Bayesian mixed model (brms) | fit_bayesmix |
Fit lump model | fit_lump |
Fit mixed model (lme4) | fit_mixed |
Fit Bayesian phylogenetic mixed model (brms) | fit_pglmm |
Fit split model | fit_split |
Plot niches | plot_niches |
Run a number of simulations with fixed parameters | run_sims |
Run simulation | run_simulation |
Simulate dataset | simul_data |