Package: BayesianWebs 0.0.7
BayesianWebs: Bayesian Modelling of Bipartite Networks
Bayesian modelling of bipartite network structure, following the approach of Young et al. <doi:10.1038/s41467-021-24149-x>.
Authors:
BayesianWebs_0.0.7.tar.gz
BayesianWebs_0.0.7.zip(r-4.7)BayesianWebs_0.0.7.zip(r-4.6)BayesianWebs_0.0.7.zip(r-4.5)
BayesianWebs_0.0.7.tgz(r-4.6-any)BayesianWebs_0.0.7.tgz(r-4.5-any)
BayesianWebs_0.0.7.tar.gz(r-4.7-any)BayesianWebs_0.0.7.tar.gz(r-4.6-any)
BayesianWebs_0.0.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BayesianWebs/json (API)
| # Install 'BayesianWebs' in R: |
| install.packages('BayesianWebs', repos = c('https://pakillo.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/pakillo/bayesianwebs/issues
Pkgdown/docs site:https://pakillo.github.io
- web - Plant-pollinator network
Last updated from:d8745cbf53. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 171 | ||
| source / vignettes | OK | 202 | ||
| linux-release-x86_64 | OK | 156 | ||
| macos-release-arm64 | OK | 96 | ||
| macos-oldrel-arm64 | OK | 127 | ||
| windows-devel | OK | 136 | ||
| windows-release | OK | 175 | ||
| windows-oldrel | OK | 107 | ||
| wasm-release | OK | 127 |
Exports:check_modelfit_modelget_posteriorget_seedplot_counts_obsplot_counts_predplot_counts_pred_obsplot_interaction_probplot_priorplot_residualspredict_countsprepare_data
Dependencies:abindarrayhelpersbackportscheckmateclicmdstanrcodacpp11distributionaldplyrfarvergenericsggdistggplot2gluegtablegtoolsisobandlabelinglatticelifecyclemagrittrmatrixStatsnetwork.toolsnumDerivpillarpkgconfigposteriorpurrrquadprogR6RColorBrewerRcpprlangS7scalesstringistringrsvUnittensorAtibbletidybayestidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Check fitted model | check_model |
| Fit model | fit_model |
| Get posterior values | get_posterior |
| Get seed used to fit a model | get_seed |
| Plot heatmap of observed counts | plot_counts_obs |
| Plot heatmap of predicted counts | plot_counts_pred |
| Plot predicted versus observed counts | plot_counts_pred_obs |
| Plot heatmap of interaction probabilities | plot_interaction_prob |
| Plot prior distribution for r (preference) parameter | plot_prior |
| Plot heatmap of residuals | plot_residuals |
| Predict interaction counts | predict_counts |
| Prepare the data for modelling | prepare_data |
| Plant-pollinator network | web |
